The formatting stuff was all in Cytoscape, which is a pretty sick program for graph stuff. Has anybody tried Cytoscape? () (DNS is SERVFAILing at the moment.) I use it for a combination of "no K" clustering (general exploration) and what's referred to in threat intelligence by the term of art "pivoting". I've been thinking that Gephi is getting long in the tooth. CyNeo4j allows users to connect to a Neo4j server to use the server as a storage for large graphs, a calculation platform through plugins in Neo4j or query the graph with Cypher. An older alternative starting with a P is Pajek, but I've never used it. Two common GUI tools for analysis and editing of graph data are Gephi and Cytoscape.
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